3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UUUAAUUAAAA
Length
11 nucleotides
Bulged bases
8INF|1|2|A|3642, 8INF|1|2|A|3643, 8INF|1|2|U|3644, 8INF|1|2|A|3648
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8INF_051 not in the Motif Atlas
Homologous match to HL_5TBW_046
Geometric discrepancy: 0.153
The information below is about HL_5TBW_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_43613.6
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

8INF|1|2|U|3639
8INF|1|2|U|3640
8INF|1|2|U|3641
8INF|1|2|A|3642
8INF|1|2|A|3643
8INF|1|2|U|3644
8INF|1|2|U|3645
8INF|1|2|A|3646
8INF|1|2|A|3647
8INF|1|2|A|3648
8INF|1|2|A|3649

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain A
G Protein Nucleolar 2
Chain M
60S ribosomal protein L37
Chain m
60S ribosomal protein L8

Coloring options:


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