HL_8INF_065

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8INF|1|2|U|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INF_065 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.2998

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8INF|1|2|C|4417
8INF|1|2|G|4418
8INF|1|2|U|4419
8INF|1|2|U|4420
8INF|1|2|C|4421
8INF|1|2|A|4422
8INF|1|2|U|4423
8INF|1|2|A|4424
8INF|1|2|G|4425

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Translation machinery-associated protein 16

Chain T

Leydig cell tumor 10 kDa protein homolog