HL_8INK_001

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAAGCAUA

Length

8 nucleotides

Bulged bases

8INK|1|2|A|39

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INK_001 not in the Motif Atlas

Geometric match to HL_7A0S_006

Geometric discrepancy: 0.1426

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8INK|1|2|U|37
8INK|1|2|A|38
8INK|1|2|A|39
8INK|1|2|G|40
8INK|1|2|C|41
8INK|1|2|A|42
8INK|1|2|U|43
8INK|1|2|A|44

Current chains

Chain 2

28S rRNA

Nearby chains

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15