HL_8INK_026

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCCCUCAGGA

Length

10 nucleotides

Bulged bases

8INK|1|2|C|1674, 8INK|1|2|C|1676

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INK_026 not in the Motif Atlas

Homologous match to HL_8P9A_134

Geometric discrepancy: 0.4732

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

8INK|1|2|U|1673
8INK|1|2|C|1674
8INK|1|2|C|1675
8INK|1|2|C|1676
8INK|1|2|U|1677
8INK|1|2|C|1678
8INK|1|2|A|1679
8INK|1|2|G|1680
8INK|1|2|G|1681
8INK|1|2|A|1682

Current chains

Chain 2

28S rRNA

Nearby chains

Chain Q

60S ribosomal protein L13

Chain w

G Protein Nucleolar 2