HL_8INK_085

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8INK|1|2|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INK_085 not in the Motif Atlas

Homologous match to HL_8CRE_061

Geometric discrepancy: 0.2366

The information below is about HL_8CRE_061

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8INK|1|2|A|4474
8INK|1|2|G|4475
8INK|1|2|C|4476
8INK|1|2|A|4477
8INK|1|2|G|4478
8INK|1|2|A|4479
8INK|1|2|A|4480
8INK|1|2|U|4481

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain I

60S ribosomal protein L9

Chain J

Ribosome biogenesis protein NSA2 homolog