HL_8IP8_004

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGUG

Length

5 nucleotides

Bulged bases

8IP8|1|RB|U|134

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_004 not in the Motif Atlas

Homologous match to HL_8P9A_116

Geometric discrepancy: 0.4728

The information below is about HL_8P9A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

8IP8|1|RB|C|131
8IP8|1|RB|U|132
8IP8|1|RB|G|133
8IP8|1|RB|U|134
8IP8|1|RB|G|135

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein uL29

Chain HA

60S ribosomal protein eL15