HL_8IP8_005

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8IP8|1|RB|A|198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_005 not in the Motif Atlas

Homologous match to HL_8P9A_117

Geometric discrepancy: 0.0853

The information below is about HL_8P9A_117

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

8IP8|1|RB|C|192
8IP8|1|RB|U|193
8IP8|1|RB|G|194
8IP8|1|RB|G|195
8IP8|1|RB|A|196
8IP8|1|RB|A|197
8IP8|1|RB|A|198
8IP8|1|RB|G|199

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain PA

60S ribosomal protein uL24

Chain TA

60S ribosomal protein eL32