HL_8IP8_007

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

8IP8|1|RB|G|216, 8IP8|1|RB|A|217, 8IP8|1|RB|G|218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_007 not in the Motif Atlas

Homologous match to HL_8P9A_119

Geometric discrepancy: 0.114

The information below is about HL_8P9A_119

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

8IP8|1|RB|G|214
8IP8|1|RB|U|215
8IP8|1|RB|G|216
8IP8|1|RB|A|217
8IP8|1|RB|G|218
8IP8|1|RB|A|219
8IP8|1|RB|G|220
8IP8|1|RB|C|221
8IP8|1|RB|C|222

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain EB

60S ribosomal protein uL4

Chain PA

60S ribosomal protein uL24

Chain SB

5.8S ribosomal RNA; 5.8S rRNA