HL_8IP8_012

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGCGCUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_012 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3175

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

8IP8|1|RB|G|448
8IP8|1|RB|G|449
8IP8|1|RB|C|450
8IP8|1|RB|G|486
8IP8|1|RB|C|487
8IP8|1|RB|U|488
8IP8|1|RB|C|489

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein eL6

Chain QA

60S ribosomal protein eL28