HL_8IP8_014

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_014 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1198

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8IP8|1|RB|C|583
8IP8|1|RB|G|584
8IP8|1|RB|A|585
8IP8|1|RB|A|586
8IP8|1|RB|A|587
8IP8|1|RB|G|588

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein eL6