HL_8IP8_016

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8IP8|1|RB|C|652

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_016 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0683

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8IP8|1|RB|U|644
8IP8|1|RB|C|645
8IP8|1|RB|U|646
8IP8|1|RB|U|647
8IP8|1|RB|G|648
8IP8|1|RB|A|649
8IP8|1|RB|A|650
8IP8|1|RB|A|651
8IP8|1|RB|C|652
8IP8|1|RB|A|653

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein uL3

Chain IA

60S ribosomal protein uL15

Chain TA

60S ribosomal protein eL32