HL_8IP8_021

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_021 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.1785

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8IP8|1|RB|G|847
8IP8|1|RB|G|848
8IP8|1|RB|A|849
8IP8|1|RB|A|850
8IP8|1|RB|A|851
8IP8|1|RB|C|852

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain GB

60S ribosomal protein eL43

Chain aa

Small subunit ribosomal RNA; SSU rRNA

Chain ib

40S ribosomal protein uS17

Chain pa

40S ribosomal protein uS15