HL_8IP8_028
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IP8_028 not in the Motif Atlas
- Homologous match to HL_8C3A_026
- Geometric discrepancy: 0.1385
- The information below is about HL_8C3A_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8IP8|1|RB|G|1151
8IP8|1|RB|G|1152
8IP8|1|RB|A|1153
8IP8|1|RB|U|1154
8IP8|1|RB|G|1155
8IP8|1|RB|A|1156
8IP8|1|RB|A|1157
8IP8|1|RB|C|1158
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain CB
- 60S ribosomal protein uL30
- Chain MB
- 60S ribosomal protein eL33
- Chain TA
- 60S ribosomal protein eL32
- Chain TB
- 5S ribosomal RNA; 5S rRNA
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