HL_8IP8_042
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGCAUCAG
- Length
- 8 nucleotides
- Bulged bases
- 8IP8|1|RB|C|1842, 8IP8|1|RB|U|1844, 8IP8|1|RB|A|1846
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IP8_042 not in the Motif Atlas
- Homologous match to HL_8P9A_152
- Geometric discrepancy: 0.0834
- The information below is about HL_8P9A_152
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28592.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8IP8|1|RB|C|1840
8IP8|1|RB|G|1841
8IP8|1|RB|C|1842
8IP8|1|RB|A|1843
8IP8|1|RB|U|1844
8IP8|1|RB|C|1845
8IP8|1|RB|A|1846
8IP8|1|RB|G|1847
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain EB
- 60S ribosomal protein uL4
- Chain MA
- 60S ribosomal protein uL22
- Chain UA
- 60S ribosomal protein eL37
- Chain VA
- 60S ribosomal protein eL39
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