HL_8IP8_044

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8IP8|1|RB|U|1921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_044 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0671

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8IP8|1|RB|C|1919
8IP8|1|RB|U|1920
8IP8|1|RB|U|1921
8IP8|1|RB|C|1922
8IP8|1|RB|G|1923
8IP8|1|RB|G|1924

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain GB

60S ribosomal protein eL43

Chain IB

60S ribosomal protein eL41

Chain aa

Small subunit ribosomal RNA; SSU rRNA