HL_8IP8_068

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_068 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1259

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8IP8|1|RB|U|3064
8IP8|1|RB|G|3065
8IP8|1|RB|A|3066
8IP8|1|RB|A|3067
8IP8|1|RB|A|3068
8IP8|1|RB|A|3069

Current chains

Chain RB

60S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein eL19

Chain SA

60S ribosomal protein eL31

Chain ZA

60S ribosomal protein eL22