HL_8IP8_081

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8IP8|1|aa|U|156, 8IP8|1|aa|U|157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_081 not in the Motif Atlas

Homologous match to HL_8P9A_192

Geometric discrepancy: 0.3982

The information below is about HL_8P9A_192

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8IP8|1|aa|G|152
8IP8|1|aa|U|153
8IP8|1|aa|A|154
8IP8|1|aa|A|155
8IP8|1|aa|U|156
8IP8|1|aa|U|157
8IP8|1|aa|C|158

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ba

40S ribosomal protein eS24

Chain gb

40S ribosomal protein eS6