HL_8IP8_099

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAUAG

Length

7 nucleotides

Bulged bases

8IP8|1|aa|U|1064

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_099 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3264

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8IP8|1|aa|C|1062
8IP8|1|aa|U|1063
8IP8|1|aa|U|1064
8IP8|1|aa|A|1065
8IP8|1|aa|U|1066
8IP8|1|aa|A|1067
8IP8|1|aa|G|1068

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain bb

40S ribosomal protein eS1

Chain xa

40S ribosomal protein eS27