HL_8IP8_103

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACUGAGAGCU

Length

10 nucleotides

Bulged bases

8IP8|1|aa|G|1247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_103 not in the Motif Atlas

Homologous match to HL_8P9A_216

Geometric discrepancy: 0.2908

The information below is about HL_8P9A_216

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8IP8|1|aa|A|1242
8IP8|1|aa|C|1243
8IP8|1|aa|U|1244
8IP8|1|aa|G|1245
8IP8|1|aa|A|1246
8IP8|1|aa|G|1247
8IP8|1|aa|A|1248
8IP8|1|aa|G|1249
8IP8|1|aa|C|1250
8IP8|1|aa|U|1251

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain sa

40S ribosomal protein uS19