HL_8IP8_105

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8IP8|1|aa|U|1318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_105 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.1261

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8IP8|1|aa|G|1313
8IP8|1|aa|U|1314
8IP8|1|aa|U|1315
8IP8|1|aa|A|1316
8IP8|1|aa|A|1317
8IP8|1|aa|U|1318
8IP8|1|aa|U|1319
8IP8|1|aa|C|1320

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain qa

40S ribosomal protein eS17