HL_8IP8_107

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUUAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_107 not in the Motif Atlas

Homologous match to HL_8P9A_220

Geometric discrepancy: 0.3827

The information below is about HL_8P9A_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

8IP8|1|aa|C|1402
8IP8|1|aa|G|1403
8IP8|1|aa|U|1404
8IP8|1|aa|U|1405
8IP8|1|aa|U|1406
8IP8|1|aa|A|1407
8IP8|1|aa|G|1408

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain qa

40S ribosomal protein eS17