HL_8IP8_109

3D structure

PDB id

8IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 80S ribosome stalled on AUG-Stop boron dependently

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUGCAAUUGUU

Length

12 nucleotides

Bulged bases

8IP8|1|aa|G|1567

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP8_109 not in the Motif Atlas

Homologous match to HL_8C3A_224

Geometric discrepancy: 0.1371

The information below is about HL_8C3A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

8IP8|1|aa|A|1558
8IP8|1|aa|U|1559
8IP8|1|aa|U|1560
8IP8|1|aa|G|1561
8IP8|1|aa|C|1562
8IP8|1|aa|A|1563
8IP8|1|aa|A|1564
8IP8|1|aa|U|1565
8IP8|1|aa|U|1566
8IP8|1|aa|G|1567
8IP8|1|aa|U|1568
8IP8|1|aa|U|1569

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain oa

40S ribosomal protein uS13

Chain ra

40S ribosomal protein eS19

Chain sa

40S ribosomal protein uS19