HL_8IP8_110
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 8IP8|1|aa|G|1609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IP8_110 not in the Motif Atlas
- Homologous match to HL_8C3A_225
- Geometric discrepancy: 0.1083
- The information below is about HL_8C3A_225
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01609.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
8IP8|1|aa|G|1602
8IP8|1|aa|U|1603
8IP8|1|aa|C|1604
8IP8|1|aa|A|1605
8IP8|1|aa|U|1606
8IP8|1|aa|C|1607
8IP8|1|aa|A|1608
8IP8|1|aa|G|1609
8IP8|1|aa|C|1610
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain la
- 40S ribosomal protein uS9
- Chain ma
- 40S ribosomal protein uS10
- Chain ra
- 40S ribosomal protein eS19
- Chain wa
- 40S ribosomal protein uS14
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