HL_8IP8_118
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IP8_118 not in the Motif Atlas
- Geometric match to HL_8C3A_229
- Geometric discrepancy: 0.093
- The information below is about HL_8C3A_229
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_61933.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8IP8|1|SB|U|47
8IP8|1|SB|A|48
8IP8|1|SB|G|49
8IP8|1|SB|C|50
8IP8|1|SB|G|51
8IP8|1|SB|A|52
8IP8|1|SB|A|53
8IP8|1|SB|A|54
8IP8|1|SB|U|55
8IP8|1|SB|G|56
Current chains
- Chain SB
- 5.8S ribosomal RNA
Nearby chains
- Chain BB
- 60S ribosomal protein uL29
- Chain NA
- 60S ribosomal protein uL23
- Chain RB
- Large subunit ribosomal RNA; LSU rRNA
- Chain UA
- 60S ribosomal protein eL37
- Chain VA
- 60S ribosomal protein eL39
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