HL_8IP9_006

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUUCGUG

Length

8 nucleotides

Bulged bases

8IP9|1|aa|U|284

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_006 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3719

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8IP9|1|aa|C|278
8IP9|1|aa|C|279
8IP9|1|aa|U|280
8IP9|1|aa|U|281
8IP9|1|aa|C|282
8IP9|1|aa|G|283
8IP9|1|aa|U|284
8IP9|1|aa|G|285

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain gb

40S ribosomal protein eS6