HL_8IP9_007

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUAGGGGC

Length

9 nucleotides

Bulged bases

8IP9|1|aa|G|341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_007 not in the Motif Atlas

Homologous match to HL_8C3A_199

Geometric discrepancy: 0.0719

The information below is about HL_8C3A_199

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8IP9|1|aa|G|334
8IP9|1|aa|A|335
8IP9|1|aa|U|336
8IP9|1|aa|A|337
8IP9|1|aa|G|338
8IP9|1|aa|G|339
8IP9|1|aa|G|340
8IP9|1|aa|G|341
8IP9|1|aa|C|342

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain ca

40S ribosomal protein eS8

Chain ib

40S ribosomal protein uS17