HL_8IP9_008

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_008 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1057

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8IP9|1|aa|U|372
8IP9|1|aa|U|373
8IP9|1|aa|A|374
8IP9|1|aa|G|375
8IP9|1|aa|G|376
8IP9|1|aa|G|377

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain eb

40S ribosomal protein uS4

Chain fb

40S ribosomal protein uS5

Chain ib

40S ribosomal protein uS17

Chain va

40S ribosomal protein uS8