HL_8IP9_009
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 8IP9|1|aa|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IP9_009 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0708
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8IP9|1|aa|C|397
8IP9|1|aa|C|398
8IP9|1|aa|U|399
8IP9|1|aa|G|400
8IP9|1|aa|A|401
8IP9|1|aa|G|402
8IP9|1|aa|A|403
8IP9|1|aa|A|404
8IP9|1|aa|A|405
8IP9|1|aa|C|406
8IP9|1|aa|G|407
8IP9|1|aa|G|408
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain ba
- 40S ribosomal protein eS24
- Chain ca
- 40S ribosomal protein eS8
- Chain gb
- 40S ribosomal protein eS6
- Chain ja
- 40S ribosomal protein eS4
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