HL_8IP9_010

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8IP9|1|aa|A|420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_010 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.1648

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

8IP9|1|aa|C|418
8IP9|1|aa|C|419
8IP9|1|aa|A|420
8IP9|1|aa|A|421
8IP9|1|aa|G|422
8IP9|1|aa|G|423

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain gb

40S ribosomal protein eS6