HL_8IP9_021
3D structure
- PDB id
- 8IP9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 40S ribosome in complex with a tRNAi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8IP9|1|aa|U|1009
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IP9_021 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.111
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8IP9|1|aa|G|1002
8IP9|1|aa|A|1003
8IP9|1|aa|U|1004
8IP9|1|aa|C|1005
8IP9|1|aa|A|1006
8IP9|1|aa|G|1007
8IP9|1|aa|A|1008
8IP9|1|aa|U|1009
8IP9|1|aa|A|1010
8IP9|1|aa|C|1011
8IP9|1|aa|C|1012
Current chains
- Chain aa
- 18S ribosomal RNA
Nearby chains
- Chain al
- mRNA
- Chain cl
- Transfer RNA; tRNA
- Chain db
- 40S ribosomal protein eS26
- Chain na
- 40S ribosomal protein uS11
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