HL_8IP9_023

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_023 not in the Motif Atlas

Homologous match to HL_8C3A_215

Geometric discrepancy: 0.0654

The information below is about HL_8C3A_215

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8IP9|1|aa|A|1089
8IP9|1|aa|G|1090
8IP9|1|aa|A|1091
8IP9|1|aa|A|1092
8IP9|1|aa|A|1093
8IP9|1|aa|U|1094

Current chains

Chain aa

18S ribosomal RNA

Nearby chains

Chain db

40S ribosomal protein eS26

Chain fb

40S ribosomal protein uS5

Chain va

40S ribosomal protein uS8