HL_8IP9_036

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

8IP9|1|cl|C|16, 8IP9|1|cl|G|18, 8IP9|1|cl|G|19, 8IP9|1|cl|A|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_036 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.1936

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IP9|1|cl|C|13
8IP9|1|cl|A|14
8IP9|1|cl|G|15
8IP9|1|cl|C|16
8IP9|1|cl|G|18
8IP9|1|cl|G|19
8IP9|1|cl|A|20
8IP9|1|cl|A|21
8IP9|1|cl|G|22

Current chains

Chain cl

tRNAi

Nearby chains