HL_8IP9_037

3D structure

PDB id

8IP9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wheat 40S ribosome in complex with a tRNAi

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCCAU(MIA)AC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: MIA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IP9_037 not in the Motif Atlas

Homologous match to HL_6CFJ_107

Geometric discrepancy: 0.0954

The information below is about HL_6CFJ_107

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

42

Unit IDs

8IP9|1|cl|G|31
8IP9|1|cl|C|32
8IP9|1|cl|C|33
8IP9|1|cl|C|34
8IP9|1|cl|A|35
8IP9|1|cl|U|36
8IP9|1|cl|MIA|37
8IP9|1|cl|A|38
8IP9|1|cl|C|39

Current chains

Chain cl

tRNAi

Nearby chains

Chain aa

Small subunit ribosomal RNA; SSU rRNA

Chain al

mRNA

Chain la

40S ribosomal protein uS9