HL_8IPD_022

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

8IPD|1|2|C|1481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPD_022 not in the Motif Atlas

Homologous match to HL_8GLP_021

Geometric discrepancy: 0.2354

The information below is about HL_8GLP_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12111.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8IPD|1|2|C|1480
8IPD|1|2|C|1481
8IPD|1|2|G|1482
8IPD|1|2|C|1483
8IPD|1|2|G|1484

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36

Chain Q

60S ribosomal protein L13