HL_8IPD_025

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8IPD|1|2|A|1630, 8IPD|1|2|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPD_025 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1309

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8IPD|1|2|G|1627
8IPD|1|2|C|1628
8IPD|1|2|G|1629
8IPD|1|2|A|1630
8IPD|1|2|A|1631
8IPD|1|2|A|1632
8IPD|1|2|G|1633
8IPD|1|2|A|1634
8IPD|1|2|C|1635

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain M

60S ribosomal protein L37

Chain U

60S ribosomal protein L15

Chain m

60S ribosomal protein L8