HL_8IPX_043

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPX_043 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.5207

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8IPX|1|2|G|2664
8IPX|1|2|U|2665
8IPX|1|2|U|2666
8IPX|1|2|C|2667
8IPX|1|2|G|2668
8IPX|1|2|C|2669
8IPX|1|2|C|2670

Current chains

Chain 2

28S rRNA

Nearby chains

Chain X

60S ribosomal protein L37a

Chain a

60S ribosomal protein L19

Chain f

Ribosome biogenesis protein NOP53