HL_8IPY_024
3D structure
- PDB id
- 8IPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 8IPY|1|2|U|1596, 8IPY|1|2|A|1600, 8IPY|1|2|A|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IPY_024 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.1388
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
8IPY|1|2|A|1593
8IPY|1|2|C|1594
8IPY|1|2|G|1595
8IPY|1|2|U|1596
8IPY|1|2|G|1597
8IPY|1|2|C|1598
8IPY|1|2|A|1599
8IPY|1|2|A|1600
8IPY|1|2|A|1601
8IPY|1|2|U|1602
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain 9
- Zinc finger protein 593
- Chain B
- 60S ribosomal protein L3
- Chain M
- 60S ribosomal protein L37
- Chain Y
- 60S ribosomal protein L17
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