HL_8IPY_025

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8IPY|1|2|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPY_025 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1234

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8IPY|1|2|G|1627
8IPY|1|2|C|1628
8IPY|1|2|G|1629
8IPY|1|2|A|1630
8IPY|1|2|A|1631
8IPY|1|2|A|1632
8IPY|1|2|G|1633
8IPY|1|2|A|1634
8IPY|1|2|C|1635

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain M

60S ribosomal protein L37

Chain U

60S ribosomal protein L15

Chain m

60S ribosomal protein L8