HL_8IPY_051

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

8IPY|1|2|A|3642, 8IPY|1|2|A|3643, 8IPY|1|2|U|3644, 8IPY|1|2|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IPY_051 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1713

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8IPY|1|2|U|3639
8IPY|1|2|U|3640
8IPY|1|2|U|3641
8IPY|1|2|A|3642
8IPY|1|2|A|3643
8IPY|1|2|U|3644
8IPY|1|2|U|3645
8IPY|1|2|A|3646
8IPY|1|2|A|3647
8IPY|1|2|A|3648
8IPY|1|2|A|3649

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain M

60S ribosomal protein L37

Chain m

60S ribosomal protein L8