HL_8IR1_008

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

8IR1|1|2|G|294, 8IR1|1|2|A|295, 8IR1|1|2|A|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR1_008 not in the Motif Atlas

Homologous match to HL_5TBW_008

Geometric discrepancy: 0.1338

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8IR1|1|2|C|289
8IR1|1|2|U|290
8IR1|1|2|U|291
8IR1|1|2|G|292
8IR1|1|2|G|293
8IR1|1|2|G|294
8IR1|1|2|A|295
8IR1|1|2|A|296
8IR1|1|2|U|297
8IR1|1|2|G|298

Current chains

Chain 2

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15