HL_8IR3_059

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

8IR3|1|2|A|4213, 8IR3|1|2|A|4214, 8IR3|1|2|C|4221

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IR3_059 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.184

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8IR3|1|2|U|4210
8IR3|1|2|C|4211
8IR3|1|2|A|4212
8IR3|1|2|A|4213
8IR3|1|2|A|4214
8IR3|1|2|C|4215
8IR3|1|2|G|4216
8IR3|1|2|G|4217
8IR3|1|2|U|4218
8IR3|1|2|A|4219
8IR3|1|2|A|4220
8IR3|1|2|C|4221
8IR3|1|2|G|4222

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L11

Chain R

Ribosome biogenesis regulatory protein homolog

Chain T

Ribosome production factor 2 homolog