HL_8JDJ_055
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UCUAAUUAG
- Length
- 9 nucleotides
- Bulged bases
- 8JDJ|1|D|U|3802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDJ_055 not in the Motif Atlas
- Homologous match to HL_8C3A_050
- Geometric discrepancy: 0.0748
- The information below is about HL_8C3A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
8JDJ|1|D|U|3796
8JDJ|1|D|C|3797
8JDJ|1|D|U|3798
8JDJ|1|D|A|3799
8JDJ|1|D|A|3800
8JDJ|1|D|U|3801
8JDJ|1|D|U|3802
8JDJ|1|D|A|3803
8JDJ|1|D|G|3804
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain a
- 60S ribosomal protein L23
- Chain w
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: