HL_8JDJ_088
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UCAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDJ_088 not in the Motif Atlas
- Homologous match to HL_8C3A_200
- Geometric discrepancy: 0.5888
- The information below is about HL_8C3A_200
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_02837.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8JDJ|1|w|U|416
8JDJ|1|w|C|417
8JDJ|1|w|A|418
8JDJ|1|w|G|419
8JDJ|1|w|G|420
8JDJ|1|w|G|421
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 6
- 40S ribosomal protein S9
- Chain 8
- 40S ribosomal protein S11
- Chain AI
- 40S ribosomal protein S15a
- Chain AJ
- 40S ribosomal protein S23
- Chain z
- 40S ribosomal protein S2
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