HL_8JDK_027

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8JDK|1|D|U|1596, 8JDK|1|D|A|1600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_027 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0617

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8JDK|1|D|A|1593
8JDK|1|D|C|1594
8JDK|1|D|G|1595
8JDK|1|D|U|1596
8JDK|1|D|G|1597
8JDK|1|D|C|1598
8JDK|1|D|A|1599
8JDK|1|D|A|1600
8JDK|1|D|A|1601
8JDK|1|D|U|1602

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain U

60S ribosomal protein L17

Chain o

60S ribosomal protein L37