HL_8JDK_031

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_031 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.3549

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8JDK|1|D|C|1816
8JDK|1|D|U|1817
8JDK|1|D|G|1818
8JDK|1|D|G|1819
8JDK|1|D|C|1820
8JDK|1|D|G|1821
8JDK|1|D|U|1822
8JDK|1|D|G|1823

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L5

Chain Y

60S ribosomal protein L21

Chain g

60S ribosomal protein L29