HL_8JDK_104

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8JDK|1|w|U|1300, 8JDK|1|w|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDK_104 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.2528

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8JDK|1|w|A|1295
8JDK|1|w|U|1296
8JDK|1|w|U|1297
8JDK|1|w|G|1298
8JDK|1|w|A|1299
8JDK|1|w|U|1300
8JDK|1|w|A|1301
8JDK|1|w|G|1302
8JDK|1|w|C|1303
8JDK|1|w|U|1304

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S15