HL_8JDK_121
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- AG(PSU)A(A2M)C(PSU)A(PSU)GAC(PSU)
- Length
- 13 nucleotides
- Bulged bases
- 8JDK|1|D|A2M|3760
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8JDK_121 not in the Motif Atlas
- Homologous match to HL_8P9A_160
- Geometric discrepancy: 0.4496
- The information below is about HL_8P9A_160
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_70658.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8JDK|1|D|A|3756
8JDK|1|D|G|3757
8JDK|1|D|PSU|3758
8JDK|1|D|A|3759
8JDK|1|D|A2M|3760
8JDK|1|D|C|3761
8JDK|1|D|PSU|3762
8JDK|1|D|A|3763
8JDK|1|D|PSU|3764
8JDK|1|D|G|3765
8JDK|1|D|A|3766
8JDK|1|D|C|3767
8JDK|1|D|PSU|3768
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain A
- mRNA
- Chain AB
- 40S ribosomal protein S15
- Chain B
- Transfer RNA; tRNA
- Chain C
- Transfer RNA; tRNA
- Chain w
- Small subunit ribosomal RNA; SSU rRNA
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