HL_8JDL_051

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

G(PSU)A(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

8JDL|1|D|C|3761, 8JDL|1|D|A|3763

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDL_051 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.4244

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8JDL|1|D|G|3757
8JDL|1|D|PSU|3758
8JDL|1|D|A|3759
8JDL|1|D|A2M|3760
8JDL|1|D|C|3761
8JDL|1|D|PSU|3762
8JDL|1|D|A|3763
8JDL|1|D|PSU|3764
8JDL|1|D|G|3765
8JDL|1|D|A|3766
8JDL|1|D|C|3767

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S15

Chain B

Transfer RNA; tRNA

Chain w

Small subunit ribosomal RNA; SSU rRNA