HL_8JDL_052

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8JDL|1|D|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDL_052 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0592

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8JDL|1|D|U|3796
8JDL|1|D|C|3797
8JDL|1|D|U|3798
8JDL|1|D|A|3799
8JDL|1|D|A|3800
8JDL|1|D|U|3801
8JDL|1|D|U|3802
8JDL|1|D|A|3803
8JDL|1|D|G|3804

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L23

Chain w

Small subunit ribosomal RNA; SSU rRNA