HL_8JDL_101

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8JDL|1|w|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8JDL_101 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.2765

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8JDL|1|w|A|1295
8JDL|1|w|U|1296
8JDL|1|w|U|1297
8JDL|1|w|G|1298
8JDL|1|w|A|1299
8JDL|1|w|U|1300
8JDL|1|w|A|1301
8JDL|1|w|G|1302
8JDL|1|w|C|1303
8JDL|1|w|U|1304

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S15